wAbstract
@Experiments with two well-studied denitrification and one recently
isolated marine suboxic zone denitrifier show that the cellular-level
denitrification N isotope effect (15ƒÃ) is typically
lower than the canonical value of `25ñ under many conditions prevalent
in the ocean. Across all three strains 15ƒÃ is 10-15ñ
at cellular nitrate reduction rates that are more representative
of the environment than the very high rates under which we and
previous investigators measure 15ƒÃ to be 20-30ñ. A
sharp decrease in 15ƒÃ is also observed in individual
nitrate drawdown assays as the extracellular nitrate concentrations
approach 2-35ƒÊM and nitrate uptake becomes the rate-limiting step.
On an apparently strain-specific basis, lower values of 15ƒÃ
are observed under diverse conditions common in the natural environment:
less reduced carbon sources, small inputs of oxygen, nutrient
availability, agitation, and age of starter culture (i.e., initial
of assays with cells that had recently depleted a large previous
nitrate amendment or were more recently in the exponential growth
(gbloomh) phase). A conserved oxygen-to-nitrogen isotope relationship
across the experiments for all three denitrifiers (18ƒÃ/15ƒÃ=0.93}-.06
(1SD)) supports the interpretation that fractionation is imparted
solely by the internal respiratory nitrate reductase, with the
amplitude of 15ƒÃ varying with the proportional importance
of cellular nitrate efflux relative to uptake. Aspects of the
15ƒÃ variation are unexpected; nevertheless, the occurrence
of lower 15ƒÃ is robust. It is uncertain if our lower
15ƒÃ estimates apply to oceanic water column denitrification
because field studies have generally yielded 15ƒÃwc between 20-30ñ, more similar to previous culture
estimates and our estimates at high cell specific nitrate reduction
rates. If denitrification in the ocean's major suboxic zones does
have an 15ƒÃ of `10-15ñ, it would remove an apparent
imbalance between global ocean N inputs and outputs previously
suggested by fixed N isotope budgeting.x
1. Introduction
2. Methods
@2.1. Strains
@2.2. Denitrification assays
@@2.2.1. Preparation of starter cultures
@@2.2.2. Assay (re-suspension) medium composition
@@2.2.3. Reactor assembly and assay conditions
@@2.2.4. Species-specific denitrification assays
@@@2.2.4.1. Nitrate re-amendments for P. denitrificans
@@@2.2.4.2. Impact of inoculum age for P. chlororaphis
@@@2.2.4.3. Impact of mechanical stirring for Marinobacter
sp.
@2.3. Sample processing
@2.4. Nitrate concentration and isotopic analyses
3. Results
4. Discussion
@4.1. Efflux model for respiratory nitrate reduction
@4.2. Cell specific nitrate reduction (CSNR)
@@4.2.1. Energy dependence of nitrate uptake, efflux and reduction
@@4.2.2. Influence of CSNR rate on 15ƒÃNaR
@4.3. Dependence of 15ƒÃ on culture conditions
@@4.3.1. Nitrate concentration and uptake limitation
@@4.3.2. Carbon and nutrient conditions
@@4.3.3. Oxygen
@@4.3.4. Growth phase of denitrifiers
@@4.3.5. Turbulence
@@4.3.6. Summary
@4.4. Implications for open ocean denitrification
@4.5. Global marine N isotope budget
5. Conclusions
Acknowledgments
Appendix A. Supplementary data
References